HL_4V92_014

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1425

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|A|520
4V92|1|A2|A|521
4V92|1|A2|U|522
4V92|1|A2|G|523
4V92|1|A2|U|524
4V92|1|A2|A|525
4V92|1|A2|A|526
4V92|1|A2|A|527
4V92|1|A2|U|528
4V92|1|A2|A|529
4V92|1|A2|C|530
4V92|1|A2|C|531
4V92|1|A2|U|532

Current chains

Chain A2

18S RRNA

Nearby chains