HL_4V92_018

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4V92|1|A2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_018 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1614

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V92|1|A2|U|764
4V92|1|A2|G|765
4V92|1|A2|U|766
4V92|1|A2|U|767
4V92|1|A2|C|768
4V92|1|A2|A|769
4V92|1|A2|A|770
4V92|1|A2|A|771
4V92|1|A2|G|772

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BJ

US4

Chain BY

ES24