HL_4V92_029

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUGAUU

Length

8 nucleotides

Bulged bases

4V92|1|A2|A|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_029 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.2769

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V92|1|A2|G|1295
4V92|1|A2|A|1296
4V92|1|A2|G|1297
4V92|1|A2|U|1298
4V92|1|A2|G|1299
4V92|1|A2|A|1300
4V92|1|A2|U|1301
4V92|1|A2|U|1302

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BC

US5

Chain BD

US3