3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUCAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V92_032 not in the Motif Atlas
Homologous match to HL_4V88_217
Geometric discrepancy: 0.2507
The information below is about HL_4V88_217
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_67216.9
Basepair signature
cWW-cWW-F-tSH
Number of instances in this motif group
9

Unit IDs

4V92|1|A2|U|1396
4V92|1|A2|U|1397
4V92|1|A2|U|1398
4V92|1|A2|C|1399
4V92|1|A2|A|1400
4V92|1|A2|A|1401
4V92|1|A2|G|1402

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BR
ES17
Chain Bg
RACK1

Coloring options:


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