HL_4V92_048

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUCAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_048 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3271

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V92|1|A2|G|1395
4V92|1|A2|U|1396
4V92|1|A2|U|1397
4V92|1|A2|U|1398
4V92|1|A2|C|1399
4V92|1|A2|A|1400
4V92|1|A2|A|1401
4V92|1|A2|G|1402
4V92|1|A2|C|1403

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BR

ES17

Chain Bg

RACK1