HL_4V97_180

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V97|1|DA|U|1453, 4V97|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V97_180 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5121

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V97|1|DA|C|1450|||A
4V97|1|DA|C|1451
4V97|1|DA|A|1452
4V97|1|DA|U|1453
4V97|1|DA|G|1455
4V97|1|DA|G|1456
4V97|1|DA|A|1457
4V97|1|DA|C|1458
4V97|1|DA|G|1459
4V97|1|DA|A|1460
4V97|1|DA|G|1461

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17