HL_4V99_120

3D structure

PDB id

4V99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Crystallographic Structure of Panicum Mosaic Virus

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUUUU

Length

6 nucleotides

Bulged bases

4V99|1|Jw|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61817.1

Basepair signature

cWW-R-R

Number of instances in this motif group

4

Unit IDs

4V99|1|Jw|A|6
4V99|1|Jw|U|7
4V99|1|Jw|U|8
4V99|1|Jw|U|9
4V99|1|Jw|U|10
4V99|1|Jw|U|11

Current chains

Chain Jw

5'-R(P*UP*UP*AP*AP*UP*AP*UP*UP*UP*UP*UP*AP*UP*UP*UP*UP*U)-3'

Nearby chains

Chain FZ

Capsid protein

Chain Fa

Capsid protein

Chain Jt

Capsid protein

Chain Ju

Capsid protein

Chain Jv

Capsid protein