HL_4V9B_121

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_121 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.106

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V9B|1|CA|C|379
4V9B|1|CA|G|380
4V9B|1|CA|C|381
4V9B|1|CA|A|382
4V9B|1|CA|A|383
4V9B|1|CA|G|384

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CS

30S RIBOSOMAL PROTEIN S16