HL_4V9B_137

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4V9B|1|CA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_137 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.231

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

4V9B|1|CA|G|1134
4V9B|1|CA|U|1135
4V9B|1|CA|U|1136
4V9B|1|CA|C|1137
4V9B|1|CA|G|1138
4V9B|1|CA|G|1139
4V9B|1|CA|C|1140

Current chains

Chain CA

16S ribosomal RNA

Nearby chains