HL_4V9B_180

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4V9B|1|DA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_180 not in the Motif Atlas

Geometric match to HL_6CZR_075

Geometric discrepancy: 0.3582

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

4V9B|1|DA|C|1092
4V9B|1|DA|G|1093
4V9B|1|DA|U|1094
4V9B|1|DA|A|1095
4V9B|1|DA|A|1096
4V9B|1|DA|U|1097
4V9B|1|DA|A|1098
4V9B|1|DA|G|1099

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6