HL_4V9B_234

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V9B|1|DA|A|1174, 4V9B|1|DA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_234 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3596

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V9B|1|DA|G|1170
4V9B|1|DA|G|1171
4V9B|1|DA|G|1173
4V9B|1|DA|A|1174
4V9B|1|DA|U|1175
4V9B|1|DA|G|1176
4V9B|1|DA|A|1177
4V9B|1|DA|C|1178
4V9B|1|DA|C|1179

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L21