HL_4V9B_239

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_239 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.4047

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V9B|1|AD|G|53
4V9B|1|AD|U|54
4V9B|1|AD|U|55
4V9B|1|AD|C|56
4V9B|1|AD|A|57
4V9B|1|AD|A|58
4V9B|1|AD|A|59
4V9B|1|AD|U|60
4V9B|1|AD|C|61

Current chains

Chain AD

TRNA-FMET

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA