HL_4V9D_045

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_045 not in the Motif Atlas

Geometric match to HL_5B2T_001

Geometric discrepancy: 0.1481

The information below is about HL_5B2T_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V9D|1|BA|C|379
4V9D|1|BA|G|380
4V9D|1|BA|C|381
4V9D|1|BA|A|382
4V9D|1|BA|A|383
4V9D|1|BA|G|384

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16