HL_4V9D_078

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_078 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.077

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9D|1|CA|C|246
4V9D|1|CA|G|247
4V9D|1|CA|G|248
4V9D|1|CA|C|249
4V9D|1|CA|G|250
4V9D|1|CA|A|251
4V9D|1|CA|G|252

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain C3

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15