HL_4V9D_087

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

4V9D|1|CA|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_087 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.0613

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V9D|1|CA|U|566
4V9D|1|CA|U|567
4V9D|1|CA|U|568
4V9D|1|CA|U|569
4V9D|1|CA|G|570
4V9D|1|CA|U|571
4V9D|1|CA|A|572
4V9D|1|CA|U|573
4V9D|1|CA|A|574
4V9D|1|CA|A|575

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21