HL_4V9D_123

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V9D|1|CA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_123 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0861

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V9D|1|CA|C|2248
4V9D|1|CA|U|2249
4V9D|1|CA|G|2250
4V9D|1|CA|G|2251
4V9D|1|CA|G|2252
4V9D|1|CA|G|2253
4V9D|1|CA|C|2254
4V9D|1|CA|G|2255
4V9D|1|CA|G|2256

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AY

ribosome recycling factor

Chain CM

50S ribosomal protein L16

Chain CW

50S ribosomal protein L27