3D structure

PDB id
4V9D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGCUAAUCUG
Length
10 nucleotides
Bulged bases
4V9D|1|DA|C|61
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9D_142 not in the Motif Atlas
Geometric match to HL_5J7L_134
Geometric discrepancy: 0.1442
The information below is about HL_5J7L_134
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_35677.3
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V9D|1|DA|U|59
4V9D|1|DA|G|60
4V9D|1|DA|C|61
4V9D|1|DA|U|62
4V9D|1|DA|A|63
4V9D|1|DA|A|64
4V9D|1|DA|U|65
4V9D|1|DA|C|66
4V9D|1|DA|U|67
4V9D|1|DA|G|68

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DT
50S ribosomal protein L23
Chain DY
50S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5764 s