HL_4V9D_154

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V9D|1|DA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_154 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1182

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9D|1|DA|G|410
4V9D|1|DA|G|411
4V9D|1|DA|A|412
4V9D|1|DA|C|413
4V9D|1|DA|C|414
4V9D|1|DA|A|415
4V9D|1|DA|U|416
4V9D|1|DA|C|417

Current chains

Chain DA

23S rRNA

Nearby chains