HL_4V9D_166

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_166 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1982

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V9D|1|DA|G|883
4V9D|1|DA|U|884
4V9D|1|DA|C|885
4V9D|1|DA|A|892
4V9D|1|DA|C|893

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BS

30S ribosomal protein S19