HL_4V9D_184

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

4V9D|1|DA|U|1729, 4V9D|1|DA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_184 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.323

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9D|1|DA|C|1727
4V9D|1|DA|C|1728
4V9D|1|DA|U|1729
4V9D|1|DA|C|1730
4V9D|1|DA|G|1731
4V9D|1|DA|C|1732
4V9D|1|DA|G|1733

Current chains

Chain DA

23S rRNA

Nearby chains