HL_4V9D_218

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9D_218 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3133

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9D|1|BA|G|377
4V9D|1|BA|G|378
4V9D|1|BA|C|379
4V9D|1|BA|G|380
4V9D|1|BA|C|381
4V9D|1|BA|A|382
4V9D|1|BA|A|383
4V9D|1|BA|G|384
4V9D|1|BA|C|385
4V9D|1|BA|C|386

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20