3D structure

PDB id
4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CCGCGAG
Length
7 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_67216.8
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
9

Unit IDs

4V9F|1|0|C|217
4V9F|1|0|C|218
4V9F|1|0|G|219
4V9F|1|0|C|220
4V9F|1|0|G|221
4V9F|1|0|A|222
4V9F|1|0|G|223

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L44e
Chain L
50S ribosomal protein L15P

Coloring options:

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