HL_4V9F_010

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGGAAUA

Length

8 nucleotides

Bulged bases

4V9F|1|0|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_23932.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

40

Unit IDs

4V9F|1|0|U|312
4V9F|1|0|U|313
4V9F|1|0|G|314
4V9F|1|0|G|315
4V9F|1|0|A|316
4V9F|1|0|A|317
4V9F|1|0|U|318
4V9F|1|0|A|319

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e