3D structure

PDB id
4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GUGACAACC
Length
9 nucleotides
Bulged bases
4V9F|1|0|G|336, 4V9F|1|0|A|337, 4V9F|1|0|C|338
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08002.10
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

4V9F|1|0|G|334
4V9F|1|0|U|335
4V9F|1|0|G|336
4V9F|1|0|A|337
4V9F|1|0|C|338
4V9F|1|0|A|339
4V9F|1|0|A|340
4V9F|1|0|C|341
4V9F|1|0|C|342

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L4P
Chain T
50S ribosomal protein L24P
Chain Y
50S ribosomal protein L32e

Coloring options:

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