3D structure

PDB id
4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UCAGAAG
Length
7 nucleotides
Bulged bases
4V9F|1|0|A|497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA with one bulged base
Broad Annotation
GNRA
Motif group
HL_85603.1
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
304

Unit IDs

4V9F|1|0|U|493
4V9F|1|0|C|494
4V9F|1|0|A|495
4V9F|1|0|G|496
4V9F|1|0|A|497
4V9F|1|0|A|498
4V9F|1|0|G|499

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L22P

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.6078 s