HL_4V9F_018

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUUG(1MA)AAAA

Length

10 nucleotides

Bulged bases

4V9F|1|0|A|631

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

149

Unit IDs

4V9F|1|0|U|623
4V9F|1|0|U|624
4V9F|1|0|U|625
4V9F|1|0|U|626
4V9F|1|0|G|627
4V9F|1|0|1MA|628
4V9F|1|0|A|629
4V9F|1|0|A|630
4V9F|1|0|A|631
4V9F|1|0|A|632

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain L

50S ribosomal protein L15P

Chain Y

50S ribosomal protein L32e