3D structure

PDB id
4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GUGAGAACC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

4V9F|1|0|G|1387
4V9F|1|0|U|1388
4V9F|1|0|G|1389
4V9F|1|0|A|1390
4V9F|1|0|G|1391
4V9F|1|0|A|1392
4V9F|1|0|A|1393
4V9F|1|0|C|1394
4V9F|1|0|C|1395

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain P
50S ribosomal protein L19e
Chain R
50S ribosomal protein L22P

Coloring options:

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