HL_4V9F_039

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAAUG

Length

7 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_56241.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V9F|1|0|C|1594
4V9F|1|0|G|1595
4V9F|1|0|U|1596
4V9F|1|0|A|1597
4V9F|1|0|A|1598
4V9F|1|0|U|1599
4V9F|1|0|G|1600

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae