HL_4V9F_043

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

1710A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4V9F|1|0|C|1705
4V9F|1|0|G|1706
4V9F|1|0|G|1707
4V9F|1|0|C|1708
4V9F|1|0|G|1709
4V9F|1|0|A|1710
4V9F|1|0|A|1711
4V9F|1|0|A|1712
4V9F|1|0|G|1713

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e