3D structure

PDB id
4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UCUAGUAACAA
Length
11 nucleotides
Bulged bases
4V9F|1|0|A|1836, 4V9F|1|0|G|1837, 4V9F|1|0|U|1838, 4V9F|1|0|A|1842
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.6
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

4V9F|1|0|U|1833
4V9F|1|0|C|1834
4V9F|1|0|U|1835
4V9F|1|0|A|1836
4V9F|1|0|G|1837
4V9F|1|0|U|1838
4V9F|1|0|A|1839
4V9F|1|0|A|1840
4V9F|1|0|C|1841
4V9F|1|0|A|1842
4V9F|1|0|A|1843

Current chains

Chain 0
23S Ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain A
50S ribosomal protein L2P

Coloring options:

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