HL_4V9F_059

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V9F|1|0|U|2389
4V9F|1|0|U|2390
4V9F|1|0|C|2391
4V9F|1|0|C|2392
4V9F|1|0|C|2393
4V9F|1|0|A|2394
4V9F|1|0|A|2395
4V9F|1|0|C|2396
4V9F|1|0|G|2397
4V9F|1|0|A|2398
4V9F|1|0|G|2399

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44e

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e