HL_4V9F_068

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases (A, C, G, U)

2786G, 2790C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.8

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V9F|1|0|C|2780
4V9F|1|0|U|2781
4V9F|1|0|G|2782
4V9F|1|0|A|2783
4V9F|1|0|A|2784
4V9F|1|0|C|2785
4V9F|1|0|G|2786
4V9F|1|0|C|2787
4V9F|1|0|A|2788
4V9F|1|0|U|2789
4V9F|1|0|C|2790
4V9F|1|0|U|2791
4V9F|1|0|A|2792
4V9F|1|0|A|2793
4V9F|1|0|G|2794

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P