HL_4V9H_078

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9H_078 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.5293

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9H|1|BA|G|1719
4V9H|1|BA|U|1720
4V9H|1|BA|G|1721
4V9H|1|BA|A|1722
4V9H|1|BA|U|1739
4V9H|1|BA|G|1740
4V9H|1|BA|A|1741
4V9H|1|BA|G|1742
4V9H|1|BA|C|1743

Current chains

Chain BA

23S ribosomal RNA

Nearby chains