HL_4V9J_105

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

4V9J|1|BA|A|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9J_105 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.2801

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V9J|1|BA|C|2856
4V9J|1|BA|G|2857
4V9J|1|BA|C|2858
4V9J|1|BA|G|2859
4V9J|1|BA|A|2860
4V9J|1|BA|G|2861

Current chains

Chain BA

23S ribosomal RNA

Nearby chains