HL_4V9J_220
3D structure
- PDB id
- 4V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.86 Å
Loop
- Sequence
- UCAGUUGGUUAGA
- Length
- 13 nucleotides
- Bulged bases
- 4V9J|1|CW|U|16, 4V9J|1|CW|U|17, 4V9J|1|CW|G|18, 4V9J|1|CW|G|19, 4V9J|1|CW|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9J_220 not in the Motif Atlas
- Homologous match to HL_4JYZ_001
- Geometric discrepancy: 0.5403
- The information below is about HL_4JYZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.4
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
4V9J|1|CW|U|12
4V9J|1|CW|C|13
4V9J|1|CW|A|14
4V9J|1|CW|G|15
4V9J|1|CW|U|16
4V9J|1|CW|U|17
4V9J|1|CW|G|18
4V9J|1|CW|G|19
4V9J|1|CW|U|20
4V9J|1|CW|U|20|||A
4V9J|1|CW|A|21
4V9J|1|CW|G|22
4V9J|1|CW|A|23
Current chains
- Chain CW
- tRNA-Met
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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