3D structure

PDB id
4V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
ACUCAUAAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_36427.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
37

Unit IDs

4V9K|1|AW|A|31
4V9K|1|AW|C|32
4V9K|1|AW|U|33
4V9K|1|AW|C|34
4V9K|1|AW|A|35
4V9K|1|AW|U|36
4V9K|1|AW|A|37
4V9K|1|AW|A|38
4V9K|1|AW|U|39

Current chains

Chain AW
transfer RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AI
30S ribosomal protein S9
Chain AM
30S ribosomal protein S13
Chain AV
messenger RNA

Coloring options:

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