HL_4V9K_035

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_22280.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

71

Unit IDs

4V9K|1|AW|G|53
4V9K|1|AW|U|54
4V9K|1|AW|U|55
4V9K|1|AW|C|56
4V9K|1|AW|G|57
4V9K|1|AW|A|58
4V9K|1|AW|A|59
4V9K|1|AW|U|60
4V9K|1|AW|C|61

Current chains

Chain AW

transfer RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S ribosomal protein L1