HL_4V9K_040

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUUCUUG

Length

8 nucleotides

Bulged bases

4V9K|1|BA|U|162, 4V9K|1|BA|U|163, 4V9K|1|BA|C|163|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_040 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1915

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4V9K|1|BA|C|155
4V9K|1|BA|U|161
4V9K|1|BA|U|162
4V9K|1|BA|U|163
4V9K|1|BA|C|163|||B
4V9K|1|BA|U|164
4V9K|1|BA|U|165
4V9K|1|BA|G|171

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28