HL_4V9K_053
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 4V9K|1|BA|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9K_053 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1914
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V9K|1|BA|U|566
4V9K|1|BA|A|567
4V9K|1|BA|U|568
4V9K|1|BA|U|569
4V9K|1|BA|G|570
4V9K|1|BA|A|571
4V9K|1|BA|A|572
4V9K|1|BA|G|573
4V9K|1|BA|C|574
4V9K|1|BA|A|575
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BP
- 50S ribosomal protein L15
- Chain BV
- 50S ribosomal protein L21
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