HL_4V9K_069

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V9K|1|BA|G|1325, 4V9K|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_069 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1327

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V9K|1|BA|G|1324
4V9K|1|BA|G|1325
4V9K|1|BA|U|1326
4V9K|1|BA|C|1327
4V9K|1|BA|G|1328
4V9K|1|BA|U|1329
4V9K|1|BA|C|1330

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22