HL_4V9K_071

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V9K|1|BA|U|1396, 4V9K|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_071 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2483

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9K|1|BA|G|1389
4V9K|1|BA|U|1390
4V9K|1|BA|U|1391
4V9K|1|BA|A|1392
4V9K|1|BA|A|1393
4V9K|1|BA|U|1394
4V9K|1|BA|A|1395
4V9K|1|BA|U|1396
4V9K|1|BA|U|1397
4V9K|1|BA|C|1398

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L23