HL_4V9K_097

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

4V9K|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_097 not in the Motif Atlas

Geometric match to HL_4V9F_069

Geometric discrepancy: 0.3489

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V9K|1|BA|C|2527
4V9K|1|BA|U|2528
4V9K|1|BA|G|2529
4V9K|1|BA|A|2530
4V9K|1|BA|A|2531
4V9K|1|BA|G|2532
4V9K|1|BA|A|2533
4V9K|1|BA|A|2534
4V9K|1|BA|G|2535
4V9K|1|BA|G|2536

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Elongation factor G

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6