HL_4V9K_102

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V9K|1|BA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_102 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1324

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

4V9K|1|BA|C|2745
4V9K|1|BA|U|2746
4V9K|1|BA|G|2747
4V9K|1|BA|A|2748
4V9K|1|BA|A|2749
4V9K|1|BA|A|2750
4V9K|1|BA|G|2751
4V9K|1|BA|C|2752
4V9K|1|BA|A|2753
4V9K|1|BA|U|2754
4V9K|1|BA|C|2755
4V9K|1|BA|U|2756
4V9K|1|BA|A|2757
4V9K|1|BA|A|2758
4V9K|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13