HL_4V9K_116

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V9K|1|CA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_116 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.3001

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4V9K|1|CA|C|342
4V9K|1|CA|U|343
4V9K|1|CA|A|344
4V9K|1|CA|C|345
4V9K|1|CA|G|346
4V9K|1|CA|G|347

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CY

Elongation factor G

Chain DO

50S ribosomal protein L14

Chain DT

50S ribosomal protein L19