HL_4V9K_125

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4V9K|1|CA|U|838|||A, 4V9K|1|CA|U|838|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_125 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.5414

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

4V9K|1|CA|G|838
4V9K|1|CA|U|838|||A
4V9K|1|CA|C|838|||B
4V9K|1|CA|U|838|||C
4V9K|1|CA|C|848

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CB

30S ribosomal protein S2