HL_4V9K_168

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGGCCCACCAGCCUAC

Length

17 nucleotides

Bulged bases

4V9K|1|DA|C|888, 4V9K|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9K|1|DA|G|880
4V9K|1|DA|G|881
4V9K|1|DA|G|882
4V9K|1|DA|G|883
4V9K|1|DA|C|884
4V9K|1|DA|C|885
4V9K|1|DA|C|886
4V9K|1|DA|A|887
4V9K|1|DA|C|888
4V9K|1|DA|C|889
4V9K|1|DA|A|890
4V9K|1|DA|G|892
4V9K|1|DA|C|893
4V9K|1|DA|C|894
4V9K|1|DA|U|895
4V9K|1|DA|A|896
4V9K|1|DA|C|897

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CS

30S ribosomal protein S19

Chain DG

50S ribosomal protein L5

Chain DZ

50S ribosomal protein L25