HL_4V9K_207

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9K_207 not in the Motif Atlas

Geometric match to HL_7A0S_063

Geometric discrepancy: 0.1251

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V9K|1|DA|C|2658
4V9K|1|DA|G|2659
4V9K|1|DA|A|2660
4V9K|1|DA|G|2661
4V9K|1|DA|A|2662
4V9K|1|DA|G|2663

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

Elongation factor G

Chain DH

50S ribosomal protein L6