HL_4V9M_019

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_019 not in the Motif Atlas

Homologous match to HL_6CZR_090

Geometric discrepancy: 0.2056

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V9M|1|AA|C|862
4V9M|1|AA|U|863
4V9M|1|AA|A|864
4V9M|1|AA|A|865
4V9M|1|AA|C|866
4V9M|1|AA|G|867

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AE

30S ribosomal protein S5

Chain AH

30S ribosomal protein S8