HL_4V9M_115

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_115 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1464

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9M|1|CA|C|320
4V9M|1|CA|A|321
4V9M|1|CA|C|322
4V9M|1|CA|U|323
4V9M|1|CA|G|324
4V9M|1|CA|A|325
4V9M|1|CA|G|326
4V9M|1|CA|A|327
4V9M|1|CA|C|328
4V9M|1|CA|A|329
4V9M|1|CA|C|330
4V9M|1|CA|G|331
4V9M|1|CA|G|332
4V9M|1|CA|G|333

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20