HL_4V9M_140

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCAGUUGGUUAGA

Length

13 nucleotides

Bulged bases

4V9M|1|CW|U|16, 4V9M|1|CW|U|17, 4V9M|1|CW|G|18, 4V9M|1|CW|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_140 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5123

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

4V9M|1|CW|U|12
4V9M|1|CW|C|13
4V9M|1|CW|A|14
4V9M|1|CW|G|15
4V9M|1|CW|U|16
4V9M|1|CW|U|17
4V9M|1|CW|G|18
4V9M|1|CW|G|19
4V9M|1|CW|U|20
4V9M|1|CW|U|20|||A
4V9M|1|CW|A|21
4V9M|1|CW|G|22
4V9M|1|CW|A|23

Current chains

Chain CW

transfer RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA